Lab Protocols 

Molecular Biology Protocols

• Bio Technology Resource - A Resource site for Molecular Biology, Biochemistry, Biophysics, and Biotechnology.

• Molecular Biology Protocols  -  Protocols for DNA purification and Blotting, by Northwest Fisheries.

• BioScience Links - include biological laboratories, methods and protocols, educational resources, grants, research centers, the history of biology, societies, and related journals.  

• Protocol On Line - Your lab's reference book.

• Techniques in Molecular Ecology

• Protocols in Molecular Biology Today Site

• Molecular Genetics Jump Station

• Bioscience Jump Sites and Directories

• Molecular Biology Gate Way -  A link to many molecular biology related sites. 

• Molecular Genetics - Markers on the Genetic Chromosome. 

• Links to Networked Genetics and Molecular Biology Research Resources. 

• ExPASy Life Sciences Directory:  Information sources for life scientists with an interest in biological macromolecules. Links to protein sequence, 3D structure and 2D-gel analytical tools are provided on the ExPASy server, and more specifically from its Proteomics tools page.

PCR Techniques & Primer Design

• PCR Jump Station : The ultimate Web page for information and links on all aspects of the Polymerase Chain Reaction (PCR).

• Primers on web : Evaluation the primers you designed.

• Primer Selection:  Selects primers from a singles sequence interactively, not from a multiple-sequence alignment.

• GeneFisher:  Interactive Primer Design from multiple DNA sequences.

• CODE HOP: Designed PCR primers from protein multiple sequence alignments.

• Primer3:  Picks primers from a single DNA sequence, not from a multiple-sequence alignment, by Whitehead Institute at MIT.

• DoPrimer: Pick primers from a single DNA sequence, not from a multiple-sequence alignment. 

• Jellyfish:  A software package that simplifies and streamlines gene analysis (for free by Biowire.com). 

• Tm Determination: Calculates primer's Tm for you.

• Alkami BioSystem Primer Software: A review site for PCR primers.

Computational Biology & Bioinformatics

• euGenes: provides a common summary of gene and genomic information from eukaryotic organisms (databases linked through Indiana University). 

• Functional Genome Jump Station - A web page for Information, Links, and News on all aspects of Functional Genomics Research.

• Mol. Biol. Program on Line

• BIRCH BioComputing Site

• Computational Biology -  Baskin Center, University of California, Santa Cruz.

• Pedro's BioMolecular Research Tools

• Biochemistry Related Programs

• Multiple Alignment Resource Page

• DNA Tools at Carlsberg Laboratory

• Staden Package Site:  Copyright (C) 1995 - 1999, Medical Research Council, Laboratory of Molecular Biology, Cambridge, UK. 

• Genetic Data Environment (GDE) Package:  consists of a multiple sequence alignment editor and menu buttons, which perform multiple tasks in manipulating of nucleotides and amino acids. 

• RnaViz  -  is a user-friendly, portable, GUI program for producing publication-quality secondary structure drawings of RNA molecules. Drawings can be created starting from DCSE alignment files if they incorporate structure information or from mfold ct files.

Forums & Reviews from Bio-Companies 

• Biowire.com: Review and Service.

Miscellaneous

• Gene Family Nomenclature - find out how a gene family is named.

• Quick Guide to Gene Nomenclature. 

• Rat Genome and Nomenclature Committee:  Rules for Nomenclature of Genes, Genetic Markers, Alleles, and Mutations in Mouse and Rat

• Bio-Ethic Net - University of Pennsylvania Center for Bio-ethics. 

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Last modified: November 21, 2008